If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ), 'gf_id' => 'HOM05D000997', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000997' ), 'data_identifier' => 'HOM05D000997', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000997', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '607', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p09310' => 'bna', 'A02p09440' => 'bna', 'A03p38150' => 'bna', 'A05p36220' => 'bna', 'A05p36260' => 'bna', 'A05p36280' => 'bna', 'A06p00050' => 'bna', 'A07p43300' => 'bna', 'A08p00370' => 'bna', 'A08p20770' => 'bna', 'A10p13420' => 'bna', 'Aa31LG10G550' => 'aar', 'Aa31LG3G12100' => 'aar', 'Aa31LG4G8110' => 'aar', 'Aa31LG6G8960' => 'aar', 'Aa31LG8G560' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.1751' => 'aag', 'Actinidia10307' => 'ach', 'Actinidia10592' => 'ach', 'Actinidia20422' => 'ach', 'Actinidia30354' => 'ach', 'Actinidia30756' => 'ach', 'Actinidia32961' => 'ach', 'Actinidia33146' => 'ach', 'Actinidia35923' => 'ach', 'Ah.04g149850' => 'amhyb', 'Ah.13g077620' => 'amhyb', 'AL1G50840' => 'aly', 'AL1G63750' => 'aly', 'AL2G38360' => 'aly', 'AL3G25170' => 'aly', 'AL8G31820' => 'aly', 'Aqoxy2G04073' => 'aox', 'Aqoxy4G02263' => 'aox', 'Aqoxy4G02264' => 'aox', 'Aqoxy5G00044' => 'aox', 'Aqoxy6G00588_Aqoxy6G00589' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0Y5ZBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.189BRL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.194FZ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.75F44K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7KRZ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B8KEMK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GC2TMU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2JQYP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KWN87X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P5X9YU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QQG3S0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RW9HBG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WIC1DS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z3ZGEB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8RB03' => 'arhy', 'AT1G36070' => 'ath', 'AT1G55680' => 'ath', 'AT1G78070' => 'ath', 'AT3G13340' => 'ath', 'AT5G56190' => 'ath', 'ATR0564G336' => 'atr', 'ATR0751G260' => 'atr', 'Atru.chr1.2206' => 'acertr', 'Atru.chr13.1233' => 'acertr', 'Atru.chr2.3893' => 'acertr', 'Atru.chr3.1755' => 'acertr', 'AUR62017176' => 'cqu', 'AUR62017177' => 'cqu', 'AUR62018488' => 'cqu', 'AUR62020932' => 'cqu', 'AUR62027726' => 'cqu', 'AUR62038526' => 'cqu', 'AUR62043117' => 'cqu', 'AUR62043118' => 'cqu', 'BcaB02g10806' => 'bca', 'BcaB03g12500' => 'bca', 'BcaB03g15972' => 'bca', 'BcaB04g16936' => 'bca', 'BcaB05g22248' => 'bca', 'BcaB06g25470' => 'bca', 'BcaB07g33192' => 'bca', 'BcaB08g35983' => 'bca', 'BcaC01g01549' => 'bca', 'BcaC01g03998' => 'bca', 'BcaC03g14239' => 'bca', 'BcaC03g14240' => 'bca', 'BcaC04g20135' => 'bca', 'BcaC05g29188' => 'bca', 'BcaC07g38239' => 'bca', 'BcaC08g43645' => 'bca', 'BcaC08g44211' => 'bca', 'BcaC08g47380' => 'bca', 'BcaC09g48302' => 'bca', 'BcaNung05158' => 'bca', 'BolC1t05122H' => 'bol', 'BolC3t16900H' => 'bol', 'BolC3t21606H' => 'bol', 'BolC5t34124H' => 'bol', 'BolC6t36144H' => 'bol', 'BolC6t36816H' => 'bol', 'BolC6t40225H' => 'bol', 'BolC8t48666H' => 'bol', 'BolC9t57598H' => 'bol', 'BraA02t05993Z' => 'bra', 'BraA02t06008Z' => 'bra', 'BraA03t12968Z' => 'bra', 'BraA05t22426Z' => 'bra', 'BraA05t22427Z' => 'bra', 'BraA05t22429Z' => 'bra', 'BraA06t23220Z' => 'bra', 'BraA07t31851Z' => 'bra', 'BraA08t32096Z' => 'bra', 'BraA08t34031Z' => 'bra', 'BraA10t43445Z' => 'bra', 'C01p51730' => 'bna', 'C02p15440' => 'bna', 'C03p46310' => 'bna', 'C03p93020' => 'bna', 'C05p54580' => 'bna', 'C06p10640' => 'bna', 'C06p16190' => 'bna', 'C06p52020' => 'bna', 'C08p09890' => 'bna', 'C09p47420' => 'bna', 'CAN.G484.130' => 'can', 'CANSAT11G1215' => 'cansat', 'CANSAT25G1691' => 'cansat', 'CANSAT78G0963' => 'cansat', 'CARHR045360' => 'chi', 'CARHR071520' => 'chi', 'CARHR071530' => 'chi', 'CARHR087950' => 'chi', 'CARHR234030' => 'chi', 'CARHR269590' => 'chi', 'Carub.0001s4420' => 'cru', 'Carub.0002s2496' => 'cru', 'Carub.0003s1272' => 'cru', 'Carub.0008s1651' => 'cru', 'Ca_00783_v3' => 'car', 'Ca_07122_v3' => 'car', 'Ca_11376_v3' => 'car', 'Ca_14140_v3' => 'car', 'Ca_15235_v3' => 'car', 'CBR_g38480' => 'cbr', 'Cc03_g10710' => 'ccan', 'Cc05_g15680' => 'ccan', 'Cc10_g07470' => 'ccan', 'CDE03G0053' => 'cde', 'CDE03G0441' => 'cde', 'CDE06G2403' => 'cde', 'Cfa008704' => 'cfa', 'Cfa014854' => 'cfa', 'Cfa015913' => 'cfa', 'Cfa016958' => 'cfa', 'Ciclev10001120m.g' => 'ccl', 'Ciclev10008133m.g' => 'ccl', 'Ciclev10015233m.g' => 'ccl', 'CiPaw.01G109400' => 'cil', 'CiPaw.05G236100' => 'cil', 'CiPaw.11G210400' => 'cil', 'CiPaw.12G142400' => 'cil', 'ClCG07G015760' => 'cla', 'ClCG08G010980' => 'cla', 'ClCG10G004490' => 'cla', 'ClCG11G015410' => 'cla', 'COL.COLO4_07786' => 'col', 'COL.COLO4_16435' => 'col', 'COL.COLO4_16436' => 'col', 'Cpa.g.sc12.70' => 'cpa', 'Cpa.g.sc36.111' => 'cpa', 'Cpa.g.sc8.306' => 'cpa', 'Cpa.g.sc8.307' => 'cpa', 'Cre06.g286450' => 'cre', 'Cre09.g391875' => 'cre', 'CsaV3_1G022930' => 'csa', 'CsaV3_3G004320' => 'csa', 'CsaV3_4G003480' => 'csa', 'CsaV3_4G028680' => 'csa', 'CSS0000819' => 'camsi', 'CSS0003886' => 'camsi', 'CSS0017744' => 'camsi', 'CSS0019061' => 'camsi', 'CSS0023147' => 'camsi', 'CSS0038018' => 'camsi', 'CSS0044088' => 'camsi', 'DCAR_005498' => 'dca', 'DCAR_008716' => 'dca', 'DCAR_013759' => 'dca', 'DCAR_017609' => 'dca', 'Dinv10210' => 'din', 'Dinv13033' => 'din', 'Dinv19645' => 'din', 'Dinv19770' => 'din', 'Dinv22712' => 'din', 'Dinv40912' => 'din', 'Dinv40913' => 'din', 'Dinv44207' => 'din', 'Dinv44754' => 'din', 'Duzib041G0081' => 'dzi', 'Duzib093G0503' => 'dzi', 'Duzib116G0846' => 'dzi', 'Duzib151G0075' => 'dzi', 'Duzib170G0833' => 'dzi', 'Duzib212G0971' => 'dzi', 'Duzib213G0843' => 'dzi', 'Duzib268G0549' => 'dzi', 'Duzib268G1685' => 'dzi', 'ECA233G4813' => 'eca', 'ECA246G1113' => 'eca', 'ECA246G5066' => 'eca', 'ECA248G1404' => 'eca', 'ECA248G1980' => 'eca', 'EL10Ac1g01254' => 'bvu', 'EL10Ac3g07397' => 'bvu', 'Eucgr.E04234' => 'egr', 'Eucgr.F00494' => 'egr', 'Eucgr.F03647' => 'egr', 'Eucgr.H00461' => 'egr', 'FAN04G0823' => 'fan', 'FAN07G2057' => 'fan', 'FAN08G2208' => 'fan', 'FAN11G1196' => 'fan', 'FAN11G1548' => 'fan', 'FAN12G0964' => 'fan', 'FAN12G1840' => 'fan', 'FAN13G1962' => 'fan', 'FAN16G2138' => 'fan', 'FAN16G2420' => 'fan', 'FAN17G0020' => 'fan', 'FAN18G0422' => 'fan', 'FAN21G0922' => 'fan', 'FAN22G1945' => 'fan', 'FAN25G0322' => 'fan', 'FAN26G2372' => 'fan', 'FvH4_3g41630' => 'fve', 'FvH4_3g41640' => 'fve', 'FvH4_3g41650' => 'fve', 'FvH4_4g12360' => 'fve', 'FvH4_5g37830' => 'fve', 'Glyma.02G097500' => 'gma', 'Glyma.04G104200' => 'gma', 'Glyma.04G112700' => 'gma', 'Glyma.06G105200' => 'gma', 'Glyma.07G270300' => 'gma', 'Glyma.09G017700' => 'gma', 'Glyma.09G034200' => 'gma', 'Glyma.15G123500' => 'gma', 'Glyma.15G123600' => 'gma', 'Glyma.15G138800' => 'gma', 'Glyma.17G003600' => 'gma', 'Glyma.18G284000' => 'gma', 'Gohir.A03G096000' => 'ghi', 'Gohir.A04G001200' => 'ghi', 'Gohir.A04G001300' => 'ghi', 'Gohir.A04G029000' => 'ghi', 'Gohir.A05G228300' => 'ghi', 'Gohir.A06G037600' => 'ghi', 'Gohir.A09G044400' => 'ghi', 'Gohir.A09G209600' => 'ghi', 'Gohir.A10G133400' => 'ghi', 'Gohir.A11G217400' => 'ghi', 'Gohir.D02G087700' => 'ghi', 'Gohir.D02G112800' => 'ghi', 'Gohir.D05G230800' => 'ghi', 'Gohir.D05G388100' => 'ghi', 'Gohir.D05G388200' => 'ghi', 'Gohir.D05G388400' => 'ghi', 'Gohir.D06G039000' => 'ghi', 'Gohir.D06G173533' => 'ghi', 'Gohir.D08G123801' => 'ghi', 'Gohir.D09G203000' => 'ghi', 'Gohir.D10G133300' => 'ghi', 'Gorai.005G127800' => 'gra', 'Gorai.006G226900' => 'gra', 'Gorai.007G126800' => 'gra', 'Gorai.009G238900' => 'gra', 'Gorai.009G454700' => 'gra', 'Gorai.009G454800' => 'gra', 'Gorai.010G043300' => 'gra', 'Gorai.011G147000' => 'gra', 'GSVIVG01004266001' => 'vvi', 'GSVIVG01007453001' => 'vvi', 'GSVIVG01009005001' => 'vvi', 'GSVIVG01014841001' => 'vvi', 'GSVIVG01031657001' => 'vvi', 'HanXRQChr01g0021761' => 'han', 'HanXRQChr02g0058101' => 'han', 'HanXRQChr02g0058121' => 'han', 'HanXRQChr05g0160001' => 'han', 'HanXRQChr05g0160021' => 'han', 'HanXRQChr05g0160031' => 'han', 'HanXRQChr05g0160371' => 'han', 'HanXRQChr07g0186071' => 'han', 'HanXRQChr07g0204601' => 'han', 'HanXRQChr07g0204611' => 'han', 'HanXRQChr08g0232661' => 'han', 'HanXRQChr08g0232891' => 'han', 'HanXRQChr11g0327671' => 'han', 'HanXRQChr12g0371901' => 'han', 'HanXRQChr17g0551551' => 'han', 'Haze_00580' => 'cav', 'Haze_09931' => 'cav', 'Haze_11713' => 'cav', 'Hma1.2p1_0120F.1_g057220' => 'hma', 'Hma1.2p1_0321F.1_g124330' => 'hma', 'HPP92_009242' => 'vpl', 'HPP92_015783' => 'vpl', 'HPP92_015790' => 'vpl', 'HPP92_017859' => 'vpl', 'HPP92_023346' => 'vpl', 'Hund19041' => 'sun', 'Hund24459' => 'sun', 'Hund26951' => 'sun', 'Lalb_Chr02g0144541' => 'lal', 'Lalb_Chr03g0041201' => 'lal', 'Lalb_Chr03g0041211' => 'lal', 'Lalb_Chr08g0241931' => 'lal', 'Lalb_Chr15g0088481' => 'lal', 'Lalb_Chr18g0057581' => 'lal', 'Lalb_Chr20g0119721' => 'lal', 'Lalb_Chr20g0119731' => 'lal', 'Lj1A900G24' => 'lonja', 'Lj1g0010392' => 'lja', 'Lj1g0027169' => 'lja', 'Lj3C242G4' => 'lonja', 'Lj3g0001117' => 'lja', 'Lj4A106G66' => 'lonja', 'Lj4A716T75' => 'lonja', 'Lj4A720G63' => 'lonja', 'Lj4g0008402' => 'lja', 'Lj6g0010302' => 'lja', 'Lsat_1_v5_gn_1_69401' => 'lsa', 'Lsat_1_v5_gn_3_104980' => 'lsa', 'Lsat_1_v5_gn_5_441' => 'lsa', 'Lsat_1_v5_gn_6_102300' => 'lsa', 'Lsat_1_v5_gn_6_57180' => 'lsa', 'Lsat_1_v5_gn_7_115500' => 'lsa', 'Lsat_1_v5_gn_7_67221' => 'lsa', 'Manes.02G154600' => 'mes', 'Manes.05G195500' => 'mes', 'Manes.08G007401' => 'mes', 'Manes.18G069100' => 'mes', 'Mapoly0062s0089' => 'mpo', 'MBI02_g36657_MAGBIO' => 'mbi', 'MBI07_g25670_MAGBIO' => 'mbi', 'MBI14_g12736_MAGBIO' => 'mbi', 'MBI15_g47074_MAGBIO' => 'mbi', 'MCO07G439' => 'mco', 'MD00G1098300' => 'mdo', 'MD03G1042700' => 'mdo', 'MD03G1216600' => 'mdo', 'MD04G1026800' => 'mdo', 'MD04G1027500' => 'mdo', 'MD05G1255200' => 'mdo', 'MD08G1180000' => 'mdo', 'MD11G1044000' => 'mdo', 'MD11G1045800' => 'mdo', 'MD15G1365300' => 'mdo', 'Medtr2g028050' => 'mtr', 'Medtr3g010010' => 'mtr', 'Medtr3g010110' => 'mtr', 'Medtr3g010140' => 'mtr', 'Medtr3g074070' => 'mtr', 'Medtr7g022190' => 'mtr', 'MELO3C010423.2' => 'cme', 'MELO3C011365.2' => 'cme', 'MELO3C014123.2' => 'cme', 'MELO3C017705.2' => 'cme', 'Migut.H01643' => 'egut', 'Migut.H01715' => 'egut', 'Migut.M01482' => 'egut', 'Migut.M01584' => 'egut', 'Migut.N00450' => 'egut', 'Migut.N02913' => 'egut', 'MSTRG.14578' => 'ama', 'MSTRG.16134' => 'ama', 'MSTRG.21984' => 'ama', 'MSTRG.22140' => 'ama', 'MSTRG.24965' => 'ama', 'Nitab4.5_0000469g0040' => 'nta', 'Nitab4.5_0000611g0090' => 'nta', 'Nitab4.5_0000978g0200' => 'nta', 'Nitab4.5_0001526g0050' => 'nta', 'Nitab4.5_0001622g0110' => 'nta', 'Nitab4.5_0003496g0010' => 'nta', 'Nitab4.5_0003570g0060' => 'nta', 'Nitab4.5_0006030g0010' => 'nta', 'Nitab4.5_0006519g0050' => 'nta', 'Nitab4.5_0007798g0010' => 'nta', 'Nn1g05307' => 'nnu', 'Nn1g07636' => 'nnu', 'Nn3g20150' => 'nnu', 'Nn5g29065' => 'nnu', 'Oeu006266.4' => 'oeu', 'Oeu013005.1' => 'oeu', 'Oeu013405.6' => 'oeu', 'Oeu016928.1' => 'oeu', 'Oeu024549.1' => 'oeu', 'Oeu025983.1' => 'oeu', 'Oeu042634.1' => 'oeu', 'Oeu061486.1' => 'oeu', 'Oeu062682.1' => 'oeu', 'Os02g0721600' => 'osa', 'Os03g0386000' => 'osa', 'Os06g0171900' => 'osa', 'Os08g0408200' => 'osa', 'Os08g0497600' => 'osa', 'Peaxi162Scf00006g00099' => 'pax', 'Peaxi162Scf00041g00054' => 'pax', 'Peaxi162Scf00232g00615' => 'pax', 'Peaxi162Scf00378g00630' => 'pax', 'PGR004G2204' => 'pgr', 'PGR004G2566' => 'pgr', 'PGR042G0258' => 'pgr', 'PGR142G0631' => 'pgr', 'PGSC0003DMG400004584' => 'stu', 'PGSC0003DMG400006249' => 'stu', 'PGSC0003DMG400008689' => 'stu', 'PGSC0003DMG400009474' => 'stu', 'PGSC0003DMG400021607' => 'stu', 'PGSC0003DMG400022250' => 'stu', 'PGSC0003DMG400022251' => 'stu', 'PGSC0003DMG400037204' => 'stu', 'PGSC0003DMG400046501' => 'stu', 'Phvul.003G089900' => 'pvu', 'Phvul.005G003900' => 'pvu', 'Phvul.006G119200' => 'pvu', 'Phvul.006G134400' => 'pvu', 'Phvul.008G017500' => 'pvu', 'Phvul.009G029400' => 'pvu', 'Potri.001G471800' => 'ptr', 'Potri.002G094100' => 'ptr', 'Potri.002G233700' => 'ptr', 'Potri.005G168600' => 'ptr', 'Potri.006G000500' => 'ptr', 'Potri.011G168600' => 'ptr', 'Potri.014G147400' => 'ptr', 'Potri.014G147500' => 'ptr', 'Potri.016G000800' => 'ptr', 'Pp3c10_22840' => 'ppa', 'Pp3c10_22842' => 'ppa', 'Pp3c3_27480' => 'ppa', 'PRCOL_00003148' => 'pco', 'Prupe.1G176900' => 'ppe', 'Prupe.1G513500' => 'ppe', 'Prupe.6G034200' => 'ppe', 'Prupe.6G035100' => 'ppe', 'Psat1g171080' => 'psa', 'Psat3g188200' => 'psa', 'Psat5g137560' => 'psa', 'Psat5g231760' => 'psa', 'PSO017G6629' => 'pso', 'PSO063G4139' => 'pso', 'PSO210G0693' => 'pso', 'PSO447G0297' => 'pso', 'PSO675G5602' => 'pso', 'PSO782G3171' => 'pso', 'QL06p027690' => 'qlo', 'QL08p000557' => 'qlo', 'QL08p000570' => 'qlo', 'QL08p000576' => 'qlo', 'QL12p036182' => 'qlo', 'QL12p036186' => 'qlo', 'RcHm_v2.0_Chr4g0410471' => 'rch', 'RcHm_v2.0_Chr5g0074671' => 'rch', 'RcHm_v2.0_Chr5g0074681' => 'rch', 'RcHm_v2.0_Chr5g0074701' => 'rch', 'RcHm_v2.0_Chr5g0074741' => 'rch', 'RcHm_v2.0_Chr7g0239721' => 'rch', 'RcHm_v2.0_Chr7g0239731' => 'rch', 'RcHm_v2.0_Chr7g0239741' => 'rch', 'RcHm_v2.0_Chr7g0239751' => 'rch', 'RcHm_v2.0_Chr7g0239761' => 'rch', 'RcHm_v2.0_Chr7g0239781' => 'rch', 'RcHm_v2.0_Chr7g0239801' => 'rch', 'RcHm_v2.0_Chr7g0239811' => 'rch', 'RcHm_v2.0_Chr7g0240001' => 'rch', 'Rhsim03G0014200' => 'rsi', 'Rhsim03G0014900' => 'rsi', 'Rhsim03G0015300' => 'rsi', 'Rhsim03G0015600' => 'rsi', 'Rhsim03G0015900' => 'rsi', 'Rhsim03G0016000' => 'rsi', 'Rhsim03G0016900' => 'rsi', 'Rhsim04G0007600' => 'rsi', 'Rhsim06G0234900' => 'rsi', 'Rhsim07G0164700' => 'rsi', 'Rhsim07G0201400' => 'rsi', 'RhsimUnG0106600' => 'rsi', 'RhsimUnG0164800' => 'rsi', 'RhsimUnG0228400' => 'rsi', 'Sabra02G0074200' => 'sbr', 'Sabra02G0178400' => 'sbr', 'Sabra05G0126000' => 'sbr', 'Sabra06G0000800' => 'sbr', 'Sabra11G0138100' => 'sbr', 'Sabra14G0110700' => 'sbr', 'Sabra16G0320300' => 'sbr', 'SalBow1G8353' => 'sbo', 'SalBow1G8669' => 'sbo', 'SalBow6G3798' => 'sbo', 'SalBow7G2814' => 'sbo', 'SalBow8G2730' => 'sbo', 'Sc01g0000140' => 'sci', 'Sc01g0000270' => 'sci', 'Sc03g0011760' => 'sci', 'Sc19g0007660' => 'sci', 'Sc19g0007690' => 'sci', 'Sc25g0005650' => 'sci', 'Sed0001478' => 'sed', 'Sed0001923' => 'sed', 'Sed0003673' => 'sed', 'Sed0007362' => 'sed', 'Sed0014160' => 'sed', 'Sed0023902' => 'sed', 'SEGI_02782' => 'sgi', 'SEGI_08412' => 'sgi', 'SEGI_17093' => 'sgi', 'SEGI_26912' => 'sgi', 'SEGI_33993' => 'sgi', 'SEGI_40636' => 'sgi', 'SGA_v2.0_scaffold11G05959' => 'sas', 'SGA_v2.0_scaffold186G40157' => 'sas', 'SGA_v2.0_scaffold239G43987' => 'sas', 'SGA_v2.0_scaffold49G18214' => 'sas', 'SGA_v2.0_scaffold7G03649' => 'sas', 'SGA_v2.0_scaffold84G26572' => 'sas', 'SHI27593' => 'shi', 'SHI27595' => 'shi', 'SHI27596' => 'shi', 'SMO172G0033' => 'smo', 'Solyc01g065650.1' => 'sly', 'Solyc01g065660.1' => 'sly', 'Solyc01g065670.1' => 'sly', 'Solyc04g045290.1' => 'sly', 'Solyc04g072890.4' => 'sly', 'Solyc07g066130.1' => 'sly', 'Solyc07g066140.1' => 'sly', 'Solyc09g098330.3' => 'sly', 'Solyc10g005730.3' => 'sly', 'Solyc12g098690.2' => 'sly', 'Sopen04g029060' => 'spe', 'Sopen07g034310' => 'spe', 'Sopen07g034320' => 'spe', 'Sopen09g036250' => 'spe', 'Sopen10g001700' => 'spe', 'Sopen12g033440' => 'spe', 'Sp1g41290' => 'spa', 'Sp3g11540' => 'spa', 'Sp5g33200' => 'spa', 'Sp6g18040' => 'spa', 'Sp7g24380' => 'spa', 'TAR362G0039' => 'tar', 'TAR365G0242' => 'tar', 'TAR381G0193' => 'tar', 'TAR624G0860' => 'tar', 'TAR625G0288' => 'tar', 'TAR625G0978' => 'tar', 'TAR626G0554' => 'tar', 'TAR626G1616' => 'tar', 'TAR627G0625' => 'tar', 'TAR628G0947' => 'tar', 'TAR633G0677' => 'tar', 'TAR633G1556' => 'tar', 'THA.LOC104800159' => 'tha', 'THA.LOC104810301' => 'tha', 'THA.LOC104811700' => 'tha', 'THA.LOC104815680' => 'tha', 'THA.LOC104816900' => 'tha', 'THA.LOC104822704' => 'tha', 'Thecc.04G186600' => 'tca', 'Thecc.07G001900' => 'tca', 'Thecc.08G110100' => 'tca', 'Thhalv10011474m.g' => 'esa', 'Thhalv10013539m.g' => 'esa', 'Thhalv10018538m.g' => 'esa', 'Thhalv10020726m.g' => 'esa', 'TPR.G10497' => 'tpr', 'TPR.G16716' => 'tpr', 'TPR.G2925' => 'tpr', 'TPR.G35209' => 'tpr', 'TWI09G0521' => 'twi', 'TWI12G1068' => 'twi', 'TWI38G1014' => 'twi', 'TWI38G2008' => 'twi', 'TWI39G0511' => 'twi', 'TWI56G0764' => 'twi', 'TWI73G0285' => 'twi', 'unitig_0.g740' => 'ugi', 'unitig_21.g20245' => 'ugi', 'unitig_578.g16205' => 'ugi', 'unitig_744.g24508' => 'ugi', 'unitig_8.g4835' => 'ugi', 'vmacro04753' => 'vma', 'vmacro04754' => 'vma', 'vmacro09800' => 'vma', 'vmacro11640' => 'vma', 'vmacro21236' => 'vma', 'VMungo0540G1250' => 'vmu', 'VMungo1080G1730' => 'vmu', 'VMungo1215G1097' => 'vmu', 'VMungo1215G2451' => 'vmu', 'Zm00001eb018700' => 'zma', 'Zm00001eb033950' => 'zma', 'Zm00001eb042230' => 'zma', 'Zm00001eb189190' => 'zma', 'Zm00001eb253050' => 'zma', 'Zm00001eb281660' => 'zma', 'Zm00001eb375380' => 'zma', 'Zm00001eb381220' => 'zma' ) $gf_id = 'HOM05D000997' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000997' ) $data_identifier = 'HOM05D000997' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 9, 'bra' => (int) 11, 'can' => (int) 1, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 5, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 4, 'cla' => (int) 4, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 4, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 12, 'ghi' => (int) 21, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 15, 'cav' => (int) 3, 'hma' => (int) 2, 'vpl' => (int) 5, 'sun' => (int) 3, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 7, 'mes' => (int) 4, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 6, 'ama' => (int) 5, 'nta' => (int) 10, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 4, 'pgr' => (int) 4, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 6, 'qlo' => (int) 6, 'rch' => (int) 14, 'rsi' => (int) 14, 'sbr' => (int) 7, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 6, 'shi' => (int) 3, 'smo' => (int) 1, 'sly' => (int) 10, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 12, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb381220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1